English: Concatenated marker gene phylogeny of the gammaproteobacterial orders Berkiellales, JABCZS01 and UBA6186.
The expanded section shows the UBA6186 order [Ca. Azoamicales], including the Ca. Azoamicaceae (monotypic). The tree annotations indicate, from left to right, MAG completeness as estimated by Anvi’o (in %), genome length (in Mbp), presence (filled squares) or absence (empty squares) of the denitrification pathway, the electron transport chain complexes NADH dehydrogenase (I), succinate dehydrogenase (II), bc1 complex (III), cytochrome bd oxidase (IV - bd), cytochrome caa₃ oxidase (IV - A), cytochrome cbb₃ oxidase (IV - C), and ATP synthase (V), and presence of at least one copy of the tlcA gene encoding an ATP/ADP transporter. The genomic features of Azoamicaceae are indicated in red, while the features of the other UBA6186 genomes are shown in gray. Sequences were obtained from genomes included in the genome taxonomy database (GTDB) and genomic catalog of Earth’s microbiomes (GEM) databases. Black circles on the branches indicate bootstrap values higher than 90 %.
OTU = Operational Taxonomic Unit
Order and genus names have been added (in purple): Proposed candidate names and GTDB names (in italics).
Remark: In GEM, OTU 10623 also belongs to the GTDB genus UBA6186 (however the current tree does not suggest this); in this case it must be located there in a basal position. Please refer to CSV file otu_taxonomy.tsv at Index of /GEM/otus