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Zitate-Liste - Chen et al. (2014), PMID 24843013, PMC 3999860 (freier Volltext); Repair-mismatch-mutations_flank-DNA

Zitate-Liste -
Chen et al. (2014), PMID 24843013, PMC 3999860 (freier Volltext); Repair-mismatch-mutations_flank-DNA
49 Species survival depends on the faithful replication of genetic information which is monitored and maintained by a number of complex and interacting DNA repair pathways (Modrich, 2006; Cannavo et al., 2007; Cortázar et al., 2007; Hsieh and Yamane, 2008; Kunz et al., 2009; Robertson, 2009; Liu et al., 2010; Jacobs and Schar, 2012; Jiricny, 2013).

/  Modrich (2006)[1]PMID 16905530; / /  Cannavo et al. (2007)[2]PMID 17148452; / /  Cortázar et al. (2007)[3]PMID 17116428; / /  Hsieh & Yamane (2008)[4]PMID 18406444; / /  Kunz et al. (2009)[5]PMID 19153655; / /  Robertson (2009)[6]PMID 19153658; / /  Liu et al. (2010)[7]PMID 20029092; / /   Jacobs & Schär (2012)[8]PMID 22048164; / /  Jiricny (2013)[9]PMID 23545421;

50 Continual DNA repair is required to correct the thousands of genetic lesions that occur daily due to just the inherent chemical lability of DNA (Atamna et al., 2000; Barnes and Lindahl, 2004).

/  Atamna et al. (2000)[10]PMID 10639140; / / Barnes & Lindahl (2004)[11]PMID 15568983; /

51 For example, the susceptibility of C (and its methylated derivative) to spontaneous hydrolytic deamination daily generates hundreds of U/G and T/G mismatches respectively, (Barnes and Lindahl, 2004) and could explain why C is the most frequent source of single nucleotide substitutions in mammals (Hwang and Green, 2004).

/  Hwang & Green (2004)[12]PMID 15292512; / 

53 Error-free base excision repair (BER) can correct the naturally occurring U/G and T/G mismatches (reviewed in Cortázar et al., 2007; Hegde et al., 2008; Robertson, 2009; Jacobs and Schar, 2012).

/  Cortázar et al. (2007)[3]PMID 17116428; / /  Hegde et al. (2008)[13]PMID 18166975; / /  Robertson (2009)[6]PMID 19153658; / / Jacobs & Schär (2012)[8]PMID 22048164; /

58 However, in lymphoid (B) cells the U/Gs that are generated by activation-induced cytidine deaminase (AID, a member of the AID/apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like (APOBEC) family of cytidine deaminases, Conticello, 2008) on transient single-stranded DNA regions produced during transcription, are prone to several mutagenic processes that enhance diversification of immunoglobulins (somatic hypermutation, SHM, Martomo and Gearhart, 2006; Teng and Papavasiliou, 2007; Peled et al., 2008).

/  Conticello (2008)[14]PMID 18598372; / / Martomo & Gearhart (2006)[15]PMID 16616477; / /  Teng & Papavasiliou (2007)[16]PMID 17576170; / /  Peled et al. (2008)[17]PMID 18304001; /

60 Normally, MMR (Modrich, 2006; Hsieh and Yamane, 2008; Jiricny, 2013) is a high fidelity process that operates post-replicatively on the nascent DNA strand to remove mismatches that have escaped the proof-reading activity of high fidelity replicative DNA polymerases.

/  Modrich (2006)[1]PMID 16905530; / /  Hsieh & Yamane (2008)[4]PMID 18406444; / /  Jiricny (2013)[9]PMID 23545421; / 

61 Essential components of this pathway include the heterodimer MutSα (MSH2 and MSH6), which recognizes mismatches, the heterodimer MutLα (MLH1 and PMS2), which accesses the mismatch-containing nascent strand in a reaction mediated by proliferating cell nuclear antigen (PCNA, a multipurpose replication clamp, e.g., Moldovan et al., 2007; Lee and Myung, 2008).

/  Moldovan et al. (2007)[18]PMID 17512402; / /  Lee & Myung (2008)[19]PMID 18525240; /

62 PCNA also activates a latent endonuclease in MutLα (Kadyrov et al., 2006; Pluciennik et al., 2010), which provides entry points for the EXO1 nuclease that excises the mismatch-containing nascent strand to expose the replication template for re-copying by a high fidelity DNA polymerase, such as polymerase δ.

/  Kadyrov et al. (2006)[20]PMID 16873062; / /  Pluciennik et al. (2010)[21]PMID 20713735; /

67 Recently, elements of non-canonical MMR have been recapitulated in vitro (Schanz et al., 2009; Peña-Diaz et al., 2012), and the latter study also showed that extracts of non-lymphoid mammalian cells can also process U/G mismatches by a non-canonical MMR process.

/  Schanz et al. (2009)[22]PMID 19307563; / /  Peña-Diaz & Jiricny (2012)[23]PMID 22475811; /

68 In addition, these non-lymphoid cells when stressed in vivo by the alkylating agent, N-methyl-N′-nitro-N-nitrosoguanidine (MNNG), generated more mutations in MMR proficient than deficient cells, thereby implicating MMR in the mutagenic process but presumably using an AID-independent mechanism (Hsieh, 2012).

/  Hsieh (2012)[24]PMID 22980456; /

71 Of interest in this regard is the mechanism that produces the enhanced mutation rate that characterizes certain tumors, which has been termed the ‘mutator phenotype’ (Bielas et al., 2006; Venkatesan et al., 2006).

/  Bielas et al. (2006)[25]PMID 17108085; / /  Venkatesan et al. (2006)[26]PMID 16359931; /

72 Recent examples of such a mutator phenotype are the high mutation rates of the C of TpCpN (or its complement, G of NpGpA) that can accompany the progression of some cancers (Nik-Zainal et al., 2012; Roberts et al., 2012).

/  Nik-Zainal et al. (2012)[27]PMID 22608084; / /  Roberts et al. (2012)[28]PMID 22607975; /

73 TpC-preferring members of the AID/APOBEC family of C deaminases, particularly APOBEC3B (A3B), mediate these mutations (Burns et al., 2013; Leonard et al., 2013; Roberts et al., 2013; Taylor et al., 2013), which can occur in strand-coordinated clusters.

/  Burns et al. (2013)[29]PMID 23852168; / /  Leonard et al. (2013)[30]PMID 24154874; / /  Roberts et al. (2013)[31]PMID 23852170; / /  Taylor et al. (2013)[32]PMID 23599896; /

75 Experiments using yeast as a model system showed that the transitory single stranded regions that arise at replication forks or during double strand break repair can accumulate such mutations upon chronic alkylation of DNA (Roberts et al., 2012).

/  Roberts et al. (2012)[28]PMID 22607975; /

76 These mutations were also observed at experimentally introduced double strand breaks coincident with overexpression of AID/APOBEC deaminases (Taylor et al., 2013).

/  Taylor et al. (2013)[32]PMID 23599896; /

80 Numerous studies have shown that processing lesions harbored by such episomes (as well as those introduced in the SV40 virion) faithfully captured the DNA repair repertoire and mutational environment of its host (e.g., Hare and Taylor, 1985; Seidman et al., 1985; Brown and Jiricny, 1987; Choi and Pfeifer, 2005; Terai et al., 2010; Pathania et al., 2011; Qi et al., 2012).

/  Hare & Taylor (1985)[33]PMID 2997788; / /  Seidman et al. (1985)[34]PMID 2998945; / /  Brown & Jiricny (1987)[35]PMID 3040266; / /  Choi & Pfeifer (2005)[36]PMID 15590329; / /  Terai et al. (2010)[37]PMID 20129063; / /  Pathania et al. (2011)[38]PMID 21963239; / /  Qi et al. (2012)[39]PMID 22367195; /

86 siRNA knockdowns also showed that components of both the BER and MMR pathways are involved in generating the single-stranded APOBEC substrate and that two factors that have diverse roles in various aspects of DNA metabolism, ataxia telangiectasia and Rad3-related protein (ATR) and PCNA (Moldovan et al., 2007; Flynn and Zou, 2011) modulate the mutagenic effect.

/  Moldovan et al. (2007)[18]PMID 17512402; / /  Flynn & Zou (2011)[40]PMID 20947357; /

88 The APOBEC deaminases are relatively ubiquitous in various tissues (Refsland et al., 2010), as is the potential for generating single-stranded templates from BER processed lesions.

/  Refsland et al. (2010)[41]PMID 20308164; /

89 These would not only include the mispairs generated from C and methyl-C by their spontaneous deamination as we found here, but potentially also those involving other normal metabolites of methyl-C (e.g., Guo et al., 2011; Wu and Zhang, 2014) and the thousands of BER substrates that arise daily from other naturally occurring degradative processes that affect DNA (Atamna et al., 2000; Barnes and Lindahl, 2004).

/  Guo et al. (2011)[42]PMID 21496894; / /  Wu & Zhang (2014)[43]PMID 24439369; / /  Atamna et al. (2000)[10]PMID 10639140; / /  Barnes & Lindahl (2004)[11]PMID 15568983; /

     { A:   Andersen et al. (2008)[44]PMID 18157158; /  Atamna et al. (2000)[10]PMID 10639140; /   }      { B:   Barnes & Lindahl (2004)[11]PMID 15568983; /  Bhutani et al. (2011)[45]PMID 21925312; /  Bielas et al. (2006)[25]PMID 17108085; /  Bishop et al. (2004)[46]PMID 15296758; /  Brown & Jiricny (1987)[35]PMID 3040266; /  Burns et al. (2013)[47]PMID 23389445; /  Burns et al. (2013)[29]PMID 23852168; /   }      { C:   Caldecott (2008)[48]PMID 18626472; /  Cannavo et al. (2007)[2]PMID 17148452; /  Carey et al. (2009)[49]PMID 20147264; /  Choi & Pfeifer (2005)[36]PMID 15590329; /  Conticello (2008)[14]PMID 18598372; /  Conticello et al. (2007)[50]PMID 17560271; /  Cortázar et al. (2007)[3]PMID 17116428; /  Cortez et al. (2001)[51]PMID 11721054; /   }

     { D:   Dèjardin & Kingston (2009)[52]PMID 19135898; /  Doehle et al. (2005)[53]PMID 15993456; /   }      { E:    }      { F:   Fijalkowska et al. (1998)[54]PMID 9707593; /  Flynn & Zou (2011)[40]PMID 20947357; /   }      { G:   Galtier et al. (1996)[55]PMID 9021275; /  Guo et al. (2011)[42]PMID 21496894; /   }

     { H:   Hanawalt & Spivak (2008)[56]PMID 19023283; /  Hare & Taylor (1985)[33]PMID 2997788; /  Hegde et al. (2008)[13]PMID 18166975; /  Hou et al. (2007)[57]PMID 17720705; /  Hsieh (2012)[24]PMID 22980456; /  Hsieh & Yamane (2008)[4]PMID 18406444; /  Huttley et al. (2000)[58]PMID 10833199; /  Hwang & Green (2004)[12]PMID 15292512; /   }

     { I:    }      { J:   Jacobs & Schär (2012)[8]PMID 22048164; /  Jiricny (2013)[9]PMID 23545421; /   }      { K:   Kadyrov et al. (2006)[20]PMID 16873062; /  Kovtun & McMurray (2007)[59]PMID 17129768; /  Kunz et al. (2009)[5]PMID 19153655; /   }

     { L:   Lange et al. (2011)[60]PMID 21258395; /  Langlois et al. (2005)[61]PMID 15809227; /  Lee & Myung (2008)[19]PMID 18525240; /  Leonard et al. (2013)[30]PMID 24154874; /  Liu et al. (2010)[7]PMID 20029092; /   }      { M:   Martomo & Gearhart (2006)[15]PMID 16616477; /  Maurano et al. (2012)[62]PMID 22955828; /  Modrich (2006)[1]PMID 16905530; /  Moldovan et al. (2007)[18]PMID 17512402; /   }

     { N:   Nam & Cortez (2011)[63]PMID 21615334; /  Nik-Zainal et al. (2012)[27]PMID 22608084; /   }

     { O:    }      { P:   Pabla et al. (2011)[64]PMID 21285353; /  Parris & Seidman (1992)[65]PMID 1644298; /  Pathania et al. (2011)[38]PMID 21963239; /  Peled et al. (2008)[17]PMID 18304001; /  Peña-Diaz et al. (2012)[66]PMID 22864113; /  Peña-Diaz & Jiricny (2012)[23]PMID 22475811; /  Pluciennik et al. (2010)[21]PMID 20713735; /  Prochnow et al. (2009)[67]PMID 19911124; /   }

     { Q:   Qi et al. (2012)[39]PMID 22367195; /   }      { R:   Refsland et al. (2010)[41]PMID 20308164; /  Roberts et al. (2013)[31]PMID 23852170; /  Roberts et al. (2012)[28]PMID 22607975; /  Robertson (2009)[6]PMID 19153658; /   }

     { S:   Schanz et al. (2009)[22]PMID 19307563; /  Seidman et al. (1985)[34]PMID 2998945; /  Stephens et al. (2012)[68]PMID 22722201; /  Strauss (2002)[69]PMID 12509259; /   }      { T:   Taylor et al. (2013)[32]PMID 23599896; /  Teng & Papavasiliou (2007)[16]PMID 17576170; /  Terai et al. (2010)[37]PMID 20129063; /   }

     { U:    }      { V:   van der Kuyl et al. (2012)[70]PMID 23131071; /  Venkatesan et al. (2006)[26]PMID 16359931; /   }      { W:   Walser & Furano (2010)[71]PMID 20498119; /  Wittkopp & Kalay (2012)[72]PMID 22143240; /  Wu et al. (2011)[73]PMID 22028835; /  Wu & Zhang (2014)[43]PMID 24439369; /   }      { X:    }      { Y:    }      { Z:    }

Tabelle mit name im ref-Tag (ref name "...)
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# Line Author (en) und Jahr Wikicode
rc#1 857 Andersen et al. (2008)[44] Andersen ''et al.'' (2008)<ref name="PMID18157158">{{Literatur |Autor=Parker L. Andersen, Fang Xu, Wei Xiao |Titel=Eukaryotic DNA damage tolerance and translesion synthesis through covalent modifications of PCNA |Sammelwerk=Cell Research |Band=18 |Nummer=1 |Verlag= |Datum=2008 |Seiten=162-173 |ISSN=1748-7838 |DOI=10.1038/cr.2007.114 |PMID=18157158}}</ref>
rc#2 858 Atamna et al. (2000)[10] Atamna ''et al.'' (2000)<ref name="PMID10639140">{{Literatur |Autor=H. Atamna, I. Cheung, B. N. Ames |Titel=A method for detecting abasic sites in living cells: age-dependent changes in base excision repair |Sammelwerk=Proceedings of the National Academy of Sciences of the United States of America |Band=97 |Nummer=2 |Verlag= |Datum=2000 |Seiten=686-691 |ISSN=0027-8424 |PMID=10639140}}</ref>
rc#3 859 Barnes & Lindahl (2004)[11] Barnes & Lindahl (2004)<ref name="PMID15568983">{{Literatur |Autor=Deborah E. Barnes, Tomas Lindahl |Titel=Repair and genetic consequences of endogenous DNA base damage in mammalian cells |Sammelwerk=Annual Review of Genetics |Band=38 |Verlag= |Datum=2004 |Seiten=445-476 |ISSN=0066-4197 |DOI=10.1146/annurev.genet.38.072902.092448 |PMID=15568983}}</ref>
rc#4 860 Bhutani et al. (2011)[45] Bhutani ''et al.'' (2011)<ref name="PMID21925312">{{Literatur |Autor=Nidhi Bhutani, David M. Burns, Helen M. Blau |Titel=DNA demethylation dynamics |Sammelwerk=Cell |Band=146 |Nummer=6 |Verlag= |Datum=2011 |Seiten=866-872 |ISSN=1097-4172 |DOI=10.1016/j.cell.2011.08.042 |PMC=3236603 |PMID=21925312}}</ref>
rc#5 861 Bielas et al. (2006)[25] Bielas ''et al.'' (2006)<ref name="PMID17108085">{{Literatur |Autor=Jason H. Bielas, Keith R. Loeb, Brian P. Rubin, Lawrence D. True, Lawrence A. Loeb |Titel=Human cancers express a mutator phenotype |Sammelwerk=Proceedings of the National Academy of Sciences of the United States of America |Band=103 |Nummer=48 |Verlag= |Datum=2006 |Seiten=18238-18242 |ISSN=0027-8424 |DOI=10.1073/pnas.0607057103 |PMC=1636340 |PMID=17108085}}</ref>
rc#6 862 Bishop et al. (2004)[46] Bishop ''et al.'' (2004)<ref name="PMID15296758">{{Literatur |Autor=Kate N. Bishop, Rebecca K. Holmes, Ann M. Sheehy, Nicholas O. Davidson, Soo-Jin Cho, Michael H. Malim |Titel=Cytidine deamination of retroviral DNA by diverse APOBEC proteins |Sammelwerk=Current biology: CB |Band=14 |Nummer=15 |Verlag= |Datum=2004 |Seiten=1392-1396 |ISSN=0960-9822 |DOI=10.1016/j.cub.2004.06.057 |PMID=15296758}}</ref>
rc#7 863 Brown & Jiricny (1987)[35] Brown & Jiricny (1987)<ref name="PMID3040266">{{Literatur |Autor=T. C. Brown, J. Jiricny |Titel=A specific mismatch repair event protects mammalian cells from loss of 5-methylcytosine |Sammelwerk=Cell |Band=50 |Nummer=6 |Verlag= |Datum=1987 |Seiten=945-950 |ISSN=0092-8674 |PMID=3040266}}</ref>
rc#8 864 Burns et al. (2013)[47] Burns ''et al.'' (2013)<ref name="PMID23389445">{{Literatur |Autor=Michael B. Burns, Lela Lackey, Michael A. Carpenter, Anurag Rathore, Allison M. Land, Brandon Leonard, Eric W. Refsland, Delshanee Kotandeniya, Natalia Tretyakova, Jason B. Nikas, Douglas Yee, Nuri A. Temiz, Duncan E. Donohue, Rebecca M. McDougle, William L. Brown, Emily K. Law, Reuben S. Harris |Titel=APOBEC3B is an enzymatic source of mutation in breast cancer |Sammelwerk=Nature |Band=494 |Nummer=7437 |Verlag= |Datum=2013 |Seiten=366-370 |ISSN=1476-4687 |DOI=10.1038/nature11881 |PMC=3907282 |PMID=23389445}}</ref>
rc#9 865 Burns et al. (2013)[29] Burns ''et al.'' (2013)<ref name="PMID23852168">{{Literatur |Autor=Michael B. Burns, Nuri A. Temiz, Reuben S. Harris |Titel=Evidence for APOBEC3B mutagenesis in multiple human cancers |Sammelwerk=Nature Genetics |Band=45 |Nummer=9 |Verlag= |Datum=2013 |Seiten=977-983 |ISSN=1546-1718 |DOI=10.1038/ng.2701 |PMC=3902892 |PMID=23852168}}</ref>
rc#10 866 Caldecott (2008)[48] Caldecott (2008)<ref name="PMID18626472">{{Literatur |Autor=Keith W. Caldecott |Titel=Single-strand break repair and genetic disease |Sammelwerk=Nature Reviews. Genetics |Band=9 |Nummer=8 |Verlag= |Datum=2008 |Seiten=619-631 |ISSN=1471-0064 |DOI=10.1038/nrg2380 |PMID=18626472}}</ref>
rc#11 867 Cannavo et al. (2007)[2] Cannavo ''et al.'' (2007)<ref name="PMID17148452">{{Literatur |Autor=Elda Cannavo, Bertran Gerrits, Giancarlo Marra, Ralph Schlapbach, Josef Jiricny |Titel=Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2 |Sammelwerk=The Journal of Biological Chemistry |Band=282 |Nummer=5 |Verlag= |Datum=2007 |Seiten=2976-2986 |ISSN=0021-9258 |DOI=10.1074/jbc.M609989200 |PMID=17148452}}</ref>
rc#12 868 Carey et al. (2009)[49] Carey ''et al.'' (2009)<ref name="PMID20147264">{{Literatur |Autor=Michael F. Carey, Craig L. Peterson, Stephen T. Smale |Titel=Chromatin immunoprecipitation (ChIP) |Sammelwerk=Cold Spring Harbor Protocols |Band=2009 |Nummer=9 |Verlag= |Datum=2009 |Seiten=pdb.prot5279 |ISSN=1559-6095 |DOI=10.1101/pdb.prot5279 |PMID=20147264}}</ref>
rc#13 869 Choi & Pfeifer (2005)[36] Choi & Pfeifer (2005)<ref name="PMID15590329">{{Literatur |Autor=Jun-Hyuk Choi, Gerd P. Pfeifer |Titel=The role of DNA polymerase eta in UV mutational spectra |Sammelwerk=DNA repair |Band=4 |Nummer=2 |Verlag= |Datum=2005 |Seiten=211-220 |ISSN=1568-7864 |DOI=10.1016/j.dnarep.2004.09.006 |PMID=15590329}}</ref>
rc#14 870 Conticello (2008)[14] Conticello (2008)<ref name="PMID18598372">{{Literatur |Autor=Silvestro G. Conticello |Titel=The AID/APOBEC family of nucleic acid mutators |Sammelwerk=Genome Biology |Band=9 |Nummer=6 |Verlag= |Datum=2008 |Seiten=229 |ISSN=1474-760X |DOI=10.1186/gb-2008-9-6-229 |PMC=2481415 |PMID=18598372}}</ref>
rc#15 871 Conticello et al. (2007)[50] Conticello ''et al.'' (2007)<ref name="PMID17560271">{{Literatur |Autor=Silvestro G. Conticello, Marc-Andre Langlois, Zizhen Yang, Michael S. Neuberger |Titel=DNA deamination in immunity: AID in the context of its APOBEC relatives |Sammelwerk=Advances in Immunology |Band=94 |Verlag= |Datum=2007 |Seiten=37-73 |ISSN=0065-2776 |DOI=10.1016/S0065-2776(06)94002-4 |PMID=17560271}}</ref>
rc#16 872 Cortázar et al. (2007)[3] Cortázar ''et al.'' (2007)<ref name="PMID17116428">{{Literatur |Autor=Daniel Cortázar, Christophe Kunz, Yusuke Saito, Roland Steinacher, Primo Schär |Titel=The enigmatic thymine DNA glycosylase |Sammelwerk=DNA repair |Band=6 |Nummer=4 |Verlag= |Datum=2007 |Seiten=489-504 |ISSN=1568-7864 |DOI=10.1016/j.dnarep.2006.10.013 |PMID=17116428}}</ref>
rc#17 873 Cortez et al. (2001)[51] Cortez ''et al.'' (2001)<ref name="PMID11721054">{{Literatur |Autor=D. Cortez, S. Guntuku, J. Qin, S. J. Elledge |Titel=ATR and ATRIP: partners in checkpoint signaling |Sammelwerk=Science (New York, N.Y.) |Band=294 |Nummer=5547 |Verlag= |Datum=2001 |Seiten=1713-1716 |ISSN=0036-8075 |DOI=10.1126/science.1065521 |PMID=11721054}}</ref>
rc#18 874 Dèjardin & Kingston (2009)[52] Dèjardin & Kingston (2009)<ref name="PMID19135898">{{Literatur |Autor=Jérôme Déjardin, Robert E. Kingston |Titel=Purification of proteins associated with specific genomic Loci |Sammelwerk=Cell |Band=136 |Nummer=1 |Verlag= |Datum=2009 |Seiten=175-186 |ISSN=1097-4172 |DOI=10.1016/j.cell.2008.11.045 |PMC=3395431 |PMID=19135898}}</ref>
rc#19 875 Doehle et al. (2005)[53] Doehle ''et al.'' (2005)<ref name="PMID15993456">{{Literatur |Autor=Brian P. Doehle, Alexandra Schäfer, Bryan R. Cullen |Titel=Human APOBEC3B is a potent inhibitor of HIV-1 infectivity and is resistant to HIV-1 Vif |Sammelwerk=Virology |Band=339 |Nummer=2 |Verlag= |Datum=2005 |Seiten=281-288 |ISSN=0042-6822 |DOI=10.1016/j.virol.2005.06.005 |PMID=15993456}}</ref>
rc#20 876 Fijalkowska et al. (1998)[54] Fijalkowska ''et al.'' (1998)<ref name="PMID9707593">{{Literatur |Autor=I. J. Fijalkowska, P. Jonczyk, M. M. Tkaczyk, M. Bialoskorska, R. M. Schaaper |Titel=Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome |Sammelwerk=Proceedings of the National Academy of Sciences of the United States of America |Band=95 |Nummer=17 |Verlag= |Datum=1998 |Seiten=10020-10025 |ISSN=0027-8424 |PMID=9707593}}</ref>
rc#21 877 Flynn & Zou (2011)[40] Flynn & Zou (2011)<ref name="PMID20947357">{{Literatur |Autor=Rachel Litman Flynn, Lee Zou |Titel=ATR: a master conductor of cellular responses to DNA replication stress |Sammelwerk=Trends in Biochemical Sciences |Band=36 |Nummer=3 |Verlag= |Datum=2011 |Seiten=133-140 |ISSN=0968-0004 |DOI=10.1016/j.tibs.2010.09.005 |PMC=3024454 |PMID=20947357}}</ref>
rc#22 878 Galtier et al. (1996)[55] Galtier ''et al.'' (1996)<ref name="PMID9021275">{{Literatur |Autor=N. Galtier, M. Gouy, C. Gautier |Titel=SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny |Sammelwerk=Computer applications in the biosciences: CABIOS |Band=12 |Nummer=6 |Verlag= |Datum=1996 |Seiten=543-548 |ISSN=0266-7061 |PMID=9021275}}</ref>
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Tabelle ohne name im ref-Tag
Bearbeiten
rc#1 857 Andersen et al. (2008) [74]PMID 18157158;
rc#2 858 Atamna et al. (2000) [75]PMID 10639140;
rc#3 859 Barnes & Lindahl (2004) [76]PMID 15568983;
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rc#31 887 Hwang & Green (2004) [104]PMID 15292512;
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Einzelnachweise

Bearbeiten
  1. ↑ a b c d Paul Modrich: Mechanisms in eukaryotic mismatch repair. In: The Journal of Biological Chemistry. Band 281, Nr. 41, 2006, ISSN 0021-9258, S. 30305–30309, doi:10.1074/jbc.R600022200, PMID 16905530, PMC 2234602 (freier Volltext).
  2. ↑ a b c Elda Cannavo, Bertran Gerrits, Giancarlo Marra, Ralph Schlapbach, Josef Jiricny: Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2. In: The Journal of Biological Chemistry. Band 282, Nr. 5, 2007, ISSN 0021-9258, S. 2976–2986, doi:10.1074/jbc.M609989200, PMID 17148452.
  3. ↑ a b c d Daniel Cortázar, Christophe Kunz, Yusuke Saito, Roland Steinacher, Primo Schär: The enigmatic thymine DNA glycosylase. In: DNA repair. Band 6, Nr. 4, 2007, ISSN 1568-7864, S. 489–504, doi:10.1016/j.dnarep.2006.10.013, PMID 17116428.
  4. ↑ a b c d Peggy Hsieh, Kazuhiko Yamane: DNA mismatch repair: molecular mechanism, cancer, and ageing. In: Mechanisms of Ageing and Development. Band 129, Nr. 7-8, 2008, ISSN 0047-6374, S. 391–407, doi:10.1016/j.mad.2008.02.012, PMID 18406444, PMC 2574955 (freier Volltext).
  5. ↑ a b c C. Kunz, Y. Saito, P. Schär: DNA Repair in mammalian cells: Mismatched repair: variations on a theme. In: Cellular and molecular life sciences: CMLS. Band 66, Nr. 6, 2009, ISSN 1420-9071, S. 1021–1038, doi:10.1007/s00018-009-8739-9, PMID 19153655.
  6. ↑ a b c d A. B. Robertson, A. Klungland, T. Rognes, I. Leiros: DNA repair in mammalian cells: Base excision repair: the long and short of it. In: Cellular and molecular life sciences: CMLS. Band 66, Nr. 6, 2009, ISSN 1420-9071, S. 981–993, doi:10.1007/s00018-009-8736-z, PMID 19153658.
  7. ↑ a b c Yiyong Liu, Yanan Fang, Hongbing Shao, Laura Lindsey-Boltz, Aziz Sancar, Paul Modrich: Interactions of human mismatch repair proteins MutSalpha and MutLalpha with proteins of the ATR-Chk1 pathway. In: The Journal of Biological Chemistry. Band 285, Nr. 8, 2010, ISSN 1083-351X, S. 5974–5982, doi:10.1074/jbc.M109.076109, PMID 20029092, PMC 2820822 (freier Volltext).
  8. ↑ a b c d Angelika L. Jacobs, Primo Schär: DNA glycosylases: in DNA repair and beyond. In: Chromosoma. Band 121, Nr. 1, 2012, ISSN 1432-0886, S. 1–20, doi:10.1007/s00412-011-0347-4, PMID 22048164, PMC 3260424 (freier Volltext).
  9. ↑ a b c d Josef Jiricny: Postreplicative mismatch repair. In: Cold Spring Harbor Perspectives in Biology. Band 5, Nr. 4, 2013, ISSN 1943-0264, S. a012633, doi:10.1101/cshperspect.a012633, PMID 23545421, PMC 3683899 (freier Volltext).
  10. ↑ a b c d H. Atamna, I. Cheung, B. N. Ames: A method for detecting abasic sites in living cells: age-dependent changes in base excision repair. In: Proceedings of the National Academy of Sciences of the United States of America. Band 97, Nr. 2, 2000, ISSN 0027-8424, S. 686–691, PMID 10639140.
  11. ↑ a b c d Deborah E. Barnes, Tomas Lindahl: Repair and genetic consequences of endogenous DNA base damage in mammalian cells. In: Annual Review of Genetics. Band 38, 2004, ISSN 0066-4197, S. 445–476, doi:10.1146/annurev.genet.38.072902.092448, PMID 15568983.
  12. ↑ a b c Dick G. Hwang, Phil Green: Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution. In: Proceedings of the National Academy of Sciences of the United States of America. Band 101, Nr. 39, 2004, ISSN 0027-8424, S. 13994–14001, doi:10.1073/pnas.0404142101, PMID 15292512.
  13. ↑ a b c Muralidhar L. Hegde, Tapas K. Hazra, Sankar Mitra: Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells. In: Cell Research. Band 18, Nr. 1, 2008, ISSN 1748-7838, S. 27–47, doi:10.1038/cr.2008.8, PMID 18166975, PMC 2692221 (freier Volltext).
  14. ↑ a b c Silvestro G. Conticello: The AID/APOBEC family of nucleic acid mutators. In: Genome Biology. Band 9, Nr. 6, 2008, ISSN 1474-760X, S. 229, doi:10.1186/gb-2008-9-6-229, PMID 18598372, PMC 2481415 (freier Volltext).
  15. ↑ a b c Stella A. Martomo, Patricia J. Gearhart: Somatic hypermutation: subverted DNA repair. In: Current Opinion in Immunology. Band 18, Nr. 3, 2006, ISSN 0952-7915, S. 243–248, doi:10.1016/j.coi.2006.03.007, PMID 16616477.
  16. ↑ a b c Grace Teng, F. Nina Papavasiliou: Immunoglobulin somatic hypermutation. In: Annual Review of Genetics. Band 41, 2007, ISSN 0066-4197, S. 107–120, doi:10.1146/annurev.genet.41.110306.130340, PMID 17576170.
  17. ↑ a b c Jonathan U. Peled, Fei Li Kuang, Maria D. Iglesias-Ussel, Sergio Roa, Susan L. Kalis, Myron F. Goodman, Matthew D. Scharff: The biochemistry of somatic hypermutation. In: Annual Review of Immunology. Band 26, 2008, ISSN 0732-0582, S. 481–511, doi:10.1146/annurev.immunol.26.021607.090236, PMID 18304001.
  18. ↑ a b c d George-Lucian Moldovan, Boris Pfander, Stefan Jentsch: PCNA, the maestro of the replication fork. In: Cell. Band 129, Nr. 4, 2007, ISSN 0092-8674, S. 665–679, doi:10.1016/j.cell.2007.05.003, PMID 17512402.
  19. ↑ a b c Kyoo-young Lee, Kyungjae Myung: PCNA modifications for regulation of post-replication repair pathways. In: Molecules and Cells. Band 26, Nr. 1, 2008, ISSN 1016-8478, S. 5–11, PMID 18525240, PMC 3518309 (freier Volltext).
  20. ↑ a b c Farid A. Kadyrov, Leonid Dzantiev, Nicoleta Constantin, Paul Modrich: Endonucleolytic function of MutLalpha in human mismatch repair. In: Cell. Band 126, Nr. 2, 2006, ISSN 0092-8674, S. 297–308, doi:10.1016/j.cell.2006.05.039, PMID 16873062.
  21. ↑ a b c Anna Pluciennik, Leonid Dzantiev, Ravi R. Iyer, Nicoleta Constantin, Farid A. Kadyrov, Paul Modrich: PCNA function in the activation and strand direction of MutL? endonuclease in mismatch repair. In: Proceedings of the National Academy of Sciences of the United States of America. Band 107, Nr. 37, 2010, ISSN 1091-6490, S. 16066–16071, doi:10.1073/pnas.1010662107, PMID 20713735, PMC 2941292 (freier Volltext).
  22. ↑ a b c Silvia Schanz, Dennis Castor, Franziska Fischer, Josef Jiricny: Interference of mismatch and base excision repair during the processing of adjacent U/G mispairs may play a key role in somatic hypermutation. In: Proceedings of the National Academy of Sciences of the United States of America. Band 106, Nr. 14, 2009, ISSN 1091-6490, S. 5593–5598, doi:10.1073/pnas.0901726106, PMID 19307563, PMC 2659717 (freier Volltext).
  23. ↑ a b c Javier Peña-Diaz, Josef Jiricny: Mammalian mismatch repair: error-free or error-prone? In: Trends in Biochemical Sciences. Band 37, Nr. 5, 2012, ISSN 0968-0004, S. 206–214, doi:10.1016/j.tibs.2012.03.001, PMID 22475811.
  24. ↑ a b c Peggy Hsieh: DNA mismatch repair: Dr. Jekyll and Mr. Hyde? In: Molecular Cell. Band 47, Nr. 5, 2012, ISSN 1097-4164, S. 665–666, doi:10.1016/j.molcel.2012.08.020, PMID 22980456, PMC 3457060 (freier Volltext).
  25. ↑ a b c Jason H. Bielas, Keith R. Loeb, Brian P. Rubin, Lawrence D. True, Lawrence A. Loeb: Human cancers express a mutator phenotype. In: Proceedings of the National Academy of Sciences of the United States of America. Band 103, Nr. 48, 2006, ISSN 0027-8424, S. 18238–18242, doi:10.1073/pnas.0607057103, PMID 17108085, PMC 1636340 (freier Volltext).
  26. ↑ a b c Ranga N. Venkatesan, Jason H. Bielas, Lawrence A. Loeb: Generation of mutator mutants during carcinogenesis. In: DNA repair. Band 5, Nr. 3, 2006, ISSN 1568-7864, S. 294–302, doi:10.1016/j.dnarep.2005.10.012, PMID 16359931.
  27. ↑ a b c Serena Nik-Zainal, Ludmil B. Alexandrov, David C. Wedge, Peter Van Loo, Christopher D. Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A. Stebbings, Andrew Menzies, Sancha Martin, Kenric Leung, Lina Chen, Catherine Leroy, Manasa Ramakrishna, Richard Rance, King Wai Lau, Laura J. Mudie, Ignacio Varela, David J. McBride, Graham R. Bignell, Susanna L. Cooke, Adam Shlien, John Gamble, Ian Whitmore, Mark Maddison, Patrick S. Tarpey, Helen R. Davies, Elli Papaemmanuil, Philip J. Stephens, Stuart McLaren, Adam P. Butler, Jon W. Teague, Göran Jönsson, Judy E. Garber, Daniel Silver, Penelope Miron, Aquila Fatima, Sandrine Boyault, Anita Langerød, Andrew Tutt, John W. M. Martens, Samuel A. J. R. Aparicio, Åke Borg, Anne Vincent Salomon, Gilles Thomas, Anne-Lise Børresen-Dale, Andrea L. Richardson, Michael S. Neuberger, P. Andrew Futreal, Peter J. Campbell, Michael R. Stratton, Breast Cancer Working Group of the International Cancer Genome Consortium: Mutational processes molding the genomes of 21 breast cancers. In: Cell. Band 149, Nr. 5, 2012, ISSN 1097-4172, S. 979–993, doi:10.1016/j.cell.2012.04.024, PMID 22608084, PMC 3414841 (freier Volltext).
  28. ↑ a b c d Steven A. Roberts, Joan Sterling, Cole Thompson, Shawn Harris, Deepak Mav, Ruchir Shah, Leszek J. Klimczak, Gregory V. Kryukov, Ewa Malc, Piotr A. Mieczkowski, Michael A. Resnick, Dmitry A. Gordenin: Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions. In: Molecular Cell. Band 46, Nr. 4, 2012, ISSN 1097-4164, S. 424–435, doi:10.1016/j.molcel.2012.03.030, PMID 22607975, PMC 3361558 (freier Volltext).
  29. ↑ a b c Michael B. Burns, Nuri A. Temiz, Reuben S. Harris: Evidence for APOBEC3B mutagenesis in multiple human cancers. In: Nature Genetics. Band 45, Nr. 9, 2013, ISSN 1546-1718, S. 977–983, doi:10.1038/ng.2701, PMID 23852168, PMC 3902892 (freier Volltext).
  30. ↑ a b c Brandon Leonard, Steven N. Hart, Michael B. Burns, Michael A. Carpenter, Nuri A. Temiz, Anurag Rathore, Rachel I. Vogel, Jason B. Nikas, Emily K. Law, William L. Brown, Ying Li, Yuji Zhang, Matthew J. Maurer, Ann L. Oberg, Julie M. Cunningham, Viji Shridhar, Debra A. Bell, Craig April, David Bentley, Marina Bibikova, R. Keira Cheetham, Jian-Bing Fan, Russell Grocock, Sean Humphray, Zoya Kingsbury, John Peden, Jeremy Chien, Elizabeth M. Swisher, Lynn C. Hartmann, Kimberly R. Kalli, Ellen L. Goode, Hugues Sicotte, Scott H. Kaufmann, Reuben S. Harris: APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma. In: Cancer Research. Band 73, Nr. 24, 2013, ISSN 1538-7445, S. 7222–7231, doi:10.1158/0008-5472.CAN-13-1753, PMID 24154874, PMC 3867573 (freier Volltext).
  31. ↑ a b c Steven A. Roberts, Michael S. Lawrence, Leszek J. Klimczak, Sara A. Grimm, David Fargo, Petar Stojanov, Adam Kiezun, Gregory V. Kryukov, Scott L. Carter, Gordon Saksena, Shawn Harris, Ruchir R. Shah, Michael A. Resnick, Gad Getz, Dmitry A. Gordenin: An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. In: Nature Genetics. Band 45, Nr. 9, 2013, ISSN 1546-1718, S. 970–976, doi:10.1038/ng.2702, PMID 23852170, PMC 3789062 (freier Volltext).
  32. ↑ a b c d Benjamin Jm Taylor, Serena Nik-Zainal, Yee Ling Wu, Lucy A. Stebbings, Keiran Raine, Peter J. Campbell, Cristina Rada, Michael R. Stratton, Michael S. Neuberger: DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis. In: eLife. Band 2, 2013, ISSN 2050-084X, S. e00534, doi:10.7554/eLife.00534, PMID 23599896, PMC 3628087 (freier Volltext).
  33. ↑ a b c J. T. Hare, J. H. Taylor: One role for DNA methylation in vertebrate cells is strand discrimination in mismatch repair. In: Proceedings of the National Academy of Sciences of the United States of America. Band 82, Nr. 21, 1985, ISSN 0027-8424, S. 7350–7354, PMID 2997788.
  34. ↑ a b c M. M. Seidman, K. Dixon, A. Razzaque, R. J. Zagursky, M. L. Berman: A shuttle vector plasmid for studying carcinogen-induced point mutations in mammalian cells. In: Gene. Band 38, Nr. 1-3, 1985, ISSN 0378-1119, S. 233–237, PMID 2998945.
  35. ↑ a b c T. C. Brown, J. Jiricny: A specific mismatch repair event protects mammalian cells from loss of 5-methylcytosine. In: Cell. Band 50, Nr. 6, 1987, ISSN 0092-8674, S. 945–950, PMID 3040266.
  36. ↑ a b c Jun-Hyuk Choi, Gerd P. Pfeifer: The role of DNA polymerase eta in UV mutational spectra. In: DNA repair. Band 4, Nr. 2, 2005, ISSN 1568-7864, S. 211–220, doi:10.1016/j.dnarep.2004.09.006, PMID 15590329.
  37. ↑ a b c Kenta Terai, Tarek Abbas, Amir A. Jazaeri, Anindya Dutta: CRL4(Cdt2) E3 ubiquitin ligase monoubiquitinates PCNA to promote translesion DNA synthesis. In: Molecular Cell. Band 37, Nr. 1, 2010, ISSN 1097-4164, S. 143–149, doi:10.1016/j.molcel.2009.12.018, PMID 20129063, PMC 2818832 (freier Volltext).
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